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AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (2756)
Replies Last Post Views
ADL: Interpreting autodock's different modes by michael.reiter
1
by Diogo Martins
ADL: ionic liquid docking by Aman Deep
1
by Diogo Martins
ADL: FF Parameters for AutoDock Vina by Nick Guros
2
by sandra
ADL: Decrease in Binding Energy with addition of Flexible Residues by Nick Guros
0
by Nick Guros
ADL: Preparing receptor with Zn ion and Cb atoms by Kat Huang
1
by Diogo Martins
ADL: Analyzing autodock vina results by MAITHRI T
2
by prateek gupta
ADL: metal ion docking by Aman Deep
4
by Diogo Martins
ADL: Autodock Vina result analysis by MAITHRI T
0
by MAITHRI T
ADL: Docking halides by Tutol, Jasmine Nojad...
0
by Tutol, Jasmine Nojad...
ADL: GRID BOX POSITION (GRID PARAMETER FILE) by Stellamaris Sotomayo...
2
by Amr AL-HOSSARY
ADL: Typical expected energy profile to be expected? by Joseph Maxwell
0
by Joseph Maxwell
ADL: Autodock Help by Tutol, Jasmine Nojad...
0
by Tutol, Jasmine Nojad...
ADL: RIGID DOCKING IN AUTODOCK by Stellamaris Sotomayo...
2
by Stefano Forli
ADL: autodock@scripps.edu by MAITHRI T
2
by MAITHRI T
ADL: Error message prepare_gpf4.py by Karim Rafie
5
by Karim Rafie
ADL: Error Message by Wong Li Zhe
1
by Karim Rafie
ADL: MGLTools installation help by Stellamaris Sotomayo...
3
by Stefano Forli
ADL: charge modification by rain
0
by rain
ADL: (no subject) by sughra muzaffar
4
by sughra muzaffar
ADL: Figure Problem by Ama
2
by Ama
ADL: Adding all Hydrogens during ligprep or only polar hydrogens by Aditya Sharma
3
by Aditya Sharma
ADL: Query_Autodock by Mukta Sharma
1
by Diogo Martins
ADL: Adding New Atom Types (Programmer) by Gaby El Alam
2
by Diogo Martins
ADL: Autodock for virtual screening by Pooja Kesari
1
by Manoel Barrionuevo
ADL: Converting vina results to pdb with preserved protonation states by Jadzia Dax
1
by Edgar Hernan Del Car...
ADL: Confirmation of downloading by Dipti Singharoy
2
by Dipti Singharoy
ADL: Error when reading local search results by Guqin Shi
1
by Guqin Shi
ADL: Software Request by Huma Tahir
5
by Huma Tahir
ADL: Do you use the precompiled version of Vina or compile it yourself? by David M. Toth
0
by David M. Toth
ADL: How to calculate docking score by Kundan Lal Chaudhary
1
by Stefano Forli
ADL: Ligand preparation script raises AsserertionError by Dipan Ghosh
5
by Dipan Ghosh
ADL: Installing AutoDock tools on Ubuntu 16.04LTS by Prija Ponnan
2
by halim saadi
ADL: Question about searching algorithm: population size and elitism by Guqin Shi
3
by Guqin Shi
ADL: Questions about Atomic Solvation Parameterization in AutoDock4 by Guqin Shi
8
by Guqin Shi
Re: ADL: docking score by Kundan Lal Chaudhary
0
by Kundan Lal Chaudhary
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