AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (3257)
Replies Last Post Views
ADL: Error when running Autodock Vina from AutoDock Tools by Gillyard, Taneisha R...
0
by Gillyard, Taneisha R...
Re: ADL: (no subject) by Michel Sanner
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by Michel Sanner
ADL: autodock download link by 宋祥民
1
by Hemapriya Kumar
ADL: (no subject) by Hemapriya Kumar
0
by Hemapriya Kumar
ADL: covalent docking with Autodock - RMSD calculation by mgoullie
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by mgoullie
ADL: (no subject) by Hemapriya Kumar
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by Hemapriya Kumar
ADL: Segmentation in AutoGrid4 on Ubuntu 20.04.1 by Zachary Riedlshah
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by Zachary Riedlshah
ADL: covalent docking with Autodock - RMSD calculation by mgoullie
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by mgoullie
ADL: Any literature survey of Vina-in vitro correlations? by Rick Sheridan
1
by Drasko Tomic
ADL: Nobel prize winning Potassium cation and 18 crown ether complexation and modeling by Jon Wil
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by Jon Wil
ADL: Equilibrated Protein Docking by Andrew Turgeson
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by Andrew Turgeson
ADL: Help with adding atomic parameter by Bhattacharyya, Rik
3
by Stefano Forli
ADL: Fwd: M1 Compatibility by Ezekiel, Sean
0
by Ezekiel, Sean
ADL: MGL Tools on macOS 11 by Navan Chauhan
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by Navan Chauhan
ADL: AutoDockTools / MGLTools Compatability with Mac OS 11? by Bret Wallace
6
by Navan Chauhan
ADL: AGFR: How to add new atom types by longorefisher
2
by stephenmolnar
ADL: RACCOON: error reading in default generated Docking parameters. by Anthony Nash
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by Anthony Nash
ADL: PDB preparation best practices for Vina? by Rick Sheridan
4
by Mark Pohl
ADL: Reg metal ligands by jambu lingam
1
by Van Dam, Hubertus
ADL: Ligand too close. AGFR with non-standard cofactor. by longorefisher
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by longorefisher
ADL: Ligand too close. AGFR with non-standard cofactor. by longorefisher
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by longorefisher
ADL: Running Racoon1.1 encounters a python exception. by Anthony Nash
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by Anthony Nash
ADL: Can oxygen or other diatomic molecule used for molecular docking? by Aziana Azral
1
by Van Dam, Hubertus
ADL: (no subject) by jambu lingam
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by jambu lingam
ADL: Error: calculation of the number of hydrogen bonds by James Starlight
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by James Starlight
ADL: bugs, bugs, bugs by Mark Pohl
2
by Mark Pohl
ADL: Using ADCP with custom peptide? by Gustavo Seabra
1
by Michel Sanner
ADL: VS_forgotten files by horse16031603
1
by horse16031603
ADL: Continuous Output by Joey Farrell
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by Joey Farrell
ADL: adcovalent error by Pedro Miguel Reis Fi...
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by Pedro Miguel Reis Fi...
ADL: Docking Entire Protein by James Lloyd
1
by Francois Berenger
ADL: Simulation Time by Joey Farrell
1
by Diogo Santos Martins
ADL: AutoDock Vina: Change dielectric constant of solvent? by Henrik Schopmans
2
by Peter Mawanga
ADL: scoring posts by Ruchika
1
by Diogo Santos Martins
ADL: (no subject) by Nupur Munjal
1
by Diogo Martins
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