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AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (2773)
Replies Last Post Views
ADL: Fwd: Raccon2 error by Debashis Panda
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by Debashis Panda
Re: ADL: Welcome to the "autodock" mailing list by bushra TAJ
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by bushra TAJ
ADL: Hydrated docking with flexible receptor residues by Jessica Gregory
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by Jessica Gregory
ADL: RV: Welcome to the "autodock" mailing list by Sole Marce, Cristina
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by Sole Marce, Cristina
ADL: Docking Vanadium complexes by Lisset Noriega
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by Lisset Noriega
ADL: Error in mgltools when running autodock by RKH Liyanage
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by RKH Liyanage
ADL: Vina, number of modes by Hengameh.Kazemdarvis...
1
by Diogo Martins
ADL: AutoGrid error in PyRx while using AutoDock wizard by s123
1
by alpana24
ADL: MGL Tools autodock error by RKH Liyanage
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by RKH Liyanage
ADL: Hydrated Docking by Jessica Gregory
1
by Diogo Martins
ADL: Error when reading local search results by Guqin Shi
2
by Guqin Shi
ADL: summarize_epdb_results4.py error by Guqin Shi
3
by Guqin Shi
ADL: can't find or open grid parameter file by Bryan Acosta Angulo
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by Bryan Acosta Angulo
ADL: Autodock protein preparation. by RKH Liyanage
3
by liu junjun
ADL: Computational point mutation changes binding analysis (AutodockVina) by michael.reiter
1
by Diogo Martins
ADL: Help please by Haider Sabri
2
by Benabderrahmane Moha...
ADL: Having difficulties running Autodock Vina by Jonathan Y Wang
3
by Bennion, Brian
ADL: Autodock Vs Vina by RKH Liyanage
6
by Mezei, Mihaly
ADL: ionic liquid docking by Aman Deep
3
by Diogo Martins
autodock vina how to add a new atom by zhangran
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by zhangran
ADL: Interpreting autodock's different modes by michael.reiter
1
by Diogo Martins
ADL: FF Parameters for AutoDock Vina by Nick Guros
2
by sandra
ADL: Decrease in Binding Energy with addition of Flexible Residues by Nick Guros
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by Nick Guros
ADL: Preparing receptor with Zn ion and Cb atoms by Kat Huang
1
by Diogo Martins
ADL: Analyzing autodock vina results by MAITHRI T
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by prateek gupta
ADL: metal ion docking by Aman Deep
4
by Diogo Martins
ADL: Autodock Vina result analysis by MAITHRI T
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by MAITHRI T
ADL: Docking halides by Tutol, Jasmine Nojad...
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by Tutol, Jasmine Nojad...
ADL: GRID BOX POSITION (GRID PARAMETER FILE) by Stellamaris Sotomayo...
2
by Amr AL-HOSSARY
ADL: Typical expected energy profile to be expected? by Joseph Maxwell
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by Joseph Maxwell
ADL: Autodock Help by Tutol, Jasmine Nojad...
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by Tutol, Jasmine Nojad...
ADL: RIGID DOCKING IN AUTODOCK by Stellamaris Sotomayo...
2
by Stefano Forli
ADL: autodock@scripps.edu by MAITHRI T
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by MAITHRI T
ADL: Error message prepare_gpf4.py by Karim Rafie
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by Karim Rafie
ADL: Error Message by Wong Li Zhe
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by Karim Rafie
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