AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (1693)
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ADL: AUTODOCK VINA question_docking with a fixed distance between 2 atoms by jingxing
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by jingxing
ADL: User defined Torsion angles by Neha Gandhi
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by Neha Gandhi
ADL: probelem during running autodock tool by Dibyaranjan Samal
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9
by Rupal Chauhan
ADL: writing out the docked conformation by Mary Varughese-2
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by Rupal Chauhan
Re: ADL: autodock Digest, Vol 93, Issue 5 by Julio Dominguez
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by Rupal Chauhan
ADL: no effective docking by Mary Varughese-2
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by Mary Varughese-2
ADL: How to write the very first log file by Jiachi
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by surbhi agrawal
ADL: vina by neshat haq
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by surbhi agrawal
ADL: Chelation of Calcium with Citrate by Nancy-12
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by Nancy-12
ADL: positive binding affinity values by Ruben Cloete
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by Ruben Cloete
Error message I'm sorry; I can't find or open "" on trying tutorial by srirupac
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by srirupac
Re: ADL: autodock Digest, Vol 92, Issue 18 by Julio Dominguez
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by Julio Dominguez
ADL: binding energy by Alfredo Chilemi
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by Stefano Forli
ADL: Information-Reg by sankara narayanan
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by Manoj-IOIB,Bio-IT
ADL: About the translation of the ligand in the Genetic algorithm by Amindri Udugala
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by Amindri Udugala
ADL: autodock force filed by Riccardo De Gonda
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by Stefano Forli
ADL: query regrarding autodock by Meenu Chopra
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by Sushil Mishra
ADL: user-generated force-fields (Re: Constraints in AutoDock 4.2, 4.0, 3.05) by Dr. Yaron Steinberg
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by Dr. Yaron Steinberg
Compilation of .dlg file at the end of docking by sohamsengupta
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by Stefano Forli
ADL: Fwd: autodock Digest, Vol 92, Issue 11 by Cristina Rodríguez
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by Cristina Rodríguez
ADL: help: no logfile for dlg or glg files by Megan Arrington
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by Annapurna M
Re: ADL: autodock Digest, Vol 92, Issue 12 by Julio Dominguez
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by Julio Dominguez
Re: ADL: autodock Digest, Vol 92, Issue 11 by Julio Dominguez
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by Julio Dominguez
ADL: autodock using problem by 孙一凡
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by UZM.VET.HEK. JALE GÜ...
ADL: Energy minimization by Annapurna M
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by Annapurna M
ADL: Constraints in AutoDock 4.2, 4.0, 3.05 by Dietrich, Nicholas
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by Stefano Forli
ADL: (no subject) by Zahra Toobaei
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by Stefano Forli
ADL: Docking Ligand-Protein by Cristina Rodríguez-2
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by Sushil Mishra
ADL: Mmkmm by uzma05
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by uzma05
ADL: t-Butyl sulfinamide Stability by Nancy-12
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by Nancy-12
ADL: Docking Ligand-Protein - General question by Cristina Rodríguez
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by Cristina Rodríguez
ADL: Methanesulfinamide Stability and Synthesis by Nancy-12
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by Nancy-12
ADL: problem with SA dlg output by carmine marco morgil...
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by carmine marco morgil...
ADL: what is command for run autodock if want to continue previous run? by mabbasi
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by mabbasi
ADL: problem with add atom type in parameter library file by mabbasi
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by mabbasi
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