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This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (2702)
Replies Last Post Views
ADL: Heme groups by Riggs, Robert
3
by Ghebremedhin, Anghes...
ADL: GPU implementation by Osvaldo Santos-Filho
1
by halim saadi
ADL: disulfide bond by demirkizak
1
by Diogo Martins
ADL: help by saher manzoor
1
by Lakhveer Singh
ADL: Making videos of ligand and receptor interactions in real time by Ghebremedhin, Anghes...
1
by Emna Harigua
ADL: buffer overflow detected ***: autodock4 terminated massage by MaryamDehdashti Jahr...
0
by MaryamDehdashti Jahr...
ADL: Error in ADT when adding hydrogens to receptor by Leonardo Solis
1
by Stefano Forli
Stabilization energy vs Score docking by AdrianM
2
by AdrianM
ADL: [ TEST ] by Diogo Martins
2
by Alcides Simão
ADL: [ TEST ] by Stefano Forli
0
by Stefano Forli
ADL: Covalent docking by HARSH KANODIA
1
by Stefano Forli
ADL: Discrepancy in Binding Energy Decomposition Values by Cockroft, Nicholas T...
2
by Cockroft, Nicholas T...
ADL: windows 32 bit by GAJANAN SONWANE
1
by Elvis Martis
ADL: Log file error by Upeka Prayaga
2
by Elvis Martis
ADL: cvs [login aborted]: connect to mgl.scripps.edu(137.131.108.109):2401 failed: Operation timed out by dimple singhania
0
by dimple singhania
Re: ADL: autodock Digest, Vol 144, Issue 13 by Mohammed Khaled Tumb...
0
by Mohammed Khaled Tumb...
ADL: AutoDock Tools Clustering analysis via command line. by Mohammed Khaled Tumb...
3
by Diogo Martins
ADL: Fixed/focused docking in Autodock by ambreen gul
1
by Elvis Martis
ADL: AutoLigand: fails to start the GUI by Paola Andrea Santos ...
0
by Paola Andrea Santos ...
ADL: Unable to compile Vina by Yew Mun Yip
3
by Amr AL-HOSSARY
expanding Vina output by dr. sakura
2
by dr. sakura
ADL: atom order after the docking by Qasim Pars
8
by Diogo Martins
ADL: Error : could not open "ligand_out.pdbqt by Rahul Aher
0
by Rahul Aher
ADL: Vina Installation by Dipti Singharoy
1
by IQRA QADDIR
ADL: Problem in running vina program through command prompt by Rahul Aher
4
by Rahul Aher
ADL: regarding the capture of image by Neha lohia
6
by Anjela Manandhar
"protein dielectric" for DNA by dr. sakura
0
by dr. sakura
ADL: vina package not available by fatahiya mohamed tap...
0
by fatahiya mohamed tap...
ADL: atom type error while docking ligands containing Pt by Vaibhav Dixit
0
by Vaibhav Dixit
ADL: Raccoon2 Error on PBS HPC Cluster by Damjan Temelkovski
1
by Damjan Temelkovski
ADL: unable to install auto dock or auto dock vina on my machine by Priya Kashyap
2
by nic
ADL: ligand preparation in vina. by neelam wafa
4
by neelam wafa
ADL: vina MPI by chimbiomol
2
by Bennion, Brian
ADL: running autodock by neelam wafa
3
by neelam wafa
ADL: (no subject) by Huma Tahir
0
by Huma Tahir
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