AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (2936)
Replies Last Post Views
ADL: [EXTERNAL] covalent docking by Imane Bjij
4
by dr. sakura
ADL: Vina forcefield parameters by Dinesh Kumar
1
by Diogo Martins
ADL: [EXTERNAL] Constraint atom problem by Fanglue Ni
4
by Fanglue Ni
ADL: [EXTERNAL] Covalent Docking: No module named 'DLFCN' by dr. sakura
0
by dr. sakura
ADL: [EXTERNAL] Multiligand simultaneous docking by ines martins
2
by Stefano Forli
ADL: [EXTERNAL] How to do loop docking by ishwar chandra
3
by Diogo Martins
ADL: [EXTERNAL] About an error by Padmaja Wakchaure
1
by Diogo Martins
ADL: [EXTERNAL] Multiple targets docking by Suprim Tha
1
by Stefano Forli
ADL: [EXTERNAL] Multiple target docking by Suprim Tha
0
by Suprim Tha
ADL: [EXTERNAL] missed coordinate bond in pdbqt files by Ama
1
by Diogo Martins
ADL: [EXTERNAL] Autogrid error by Aparna Chaturvedi
0
by Aparna Chaturvedi
ADL: [EXTERNAL] background color in AutoDock Tools by Barb Bauer
1
by Michel Sanner
ADL: [EXTERNAL] Autodock Vina by Sudenur Boldaz
1
by Diogo Martins
ADL: [EXTERNAL] Assigning a total net charge by Erdal Anıl Dalgakıra...
1
by Diogo Martins
ADL: [EXTERNAL] Non-Integral Charges by Okoro, Cosmas
1
by Mezei, Mihaly
ADL: [EXTERNAL] Non-integral Charge on Protein Residue by Okoro, Cosmas
1
by Diogo Martins
ADL: [EXTERNAL] Failed to run Autodock compiled using MinGW-w64 by march_happy
0
by march_happy
ADL: [EXTERNAL] dlg file by vijay Patel
0
by vijay Patel
ADL: [EXTERNAL] Raccoon by Mishelle Oña
0
by Mishelle Oña
ADL: [EXTERNAL] Autodock Vina - Space dimensions problem by Roberto Rivera
0
by Roberto Rivera
ADL: [EXTERNAL] problem with energy binding results by fatemeh.haghighi
1
by Diogo Martins
ADL: [EXTERNAL] Autodock vina installation help by Clarisa Ester Alvare...
1
by Diogo Martins
ADL: Obtain vina score of given ligand-protein pose by José Emilio Sánchez ...
4
by José Emilio Sánchez ...
ADL: Autodock4Zn by Aayush Gupta
3
by Stefano Forli
ADL: Visualization by Yu Mikame
1
by march_happy
ADL: docking validation and minimized protein by dr. sakura
3
by dr. sakura
ADL: ligand preparation by Chao Chen
2
by Diogo Martins
ADL: ADT problem by zhou jinming
0
by zhou jinming
ADL: PDB to PDBQt = Broken bonds by carlos klinger
7
by carlos klinger
Re: ADL:   Parameters for metal in lgands by Academic Research
1
by Stefano Forli
ADL: Raccoon cannot generate GPF by Samantha Hartanto
2
by Stefano Forli
ADL: Parameters for metal in lgands by Aayush Gupta
1
by Stefano Forli
ADL: Multiple dockings by Suprim Tha
7
by bokcmho
ADL: (no subject) by Zsofia Lengyel
1
by Michel Sanner
ADL: Silicon by Academic Research
0
by Academic Research
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