ADL: Vina Error

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ADL: Vina Error

Dvořáková Marcela UEB
Hi,


I am having problem running Vina: it shows this message: "Error: could not open "5DJ5.pdbqt" for reading" (which is my receptor file). See attachment. I am using Pymol/autodock tools to create pdbqt file.


I used the same procedure before and had no problems.


Do you have an idea what can be wrong?


Thank you for your answer.


Best regards,

Marcela


Upozornění: Není-li v této zprávě výslovně uvedeno jinak, není tato e-mailová zpráva návrhem na uzavření smlouvy ani přijetím případného návrhu na uzavření smlouvy a nezakládá předsmluvní odpovědnost Ústavu experimentální botaniky AV ČR, v. v. i.

Disclaimer: If not expressly stated otherwise, this e-mail message cannot be considered as a proposal to conclude a contract, neither the acceptance of a proposal to conclude a contract, nor does it create any pre-contractual liability on the part of the Institute of experimental botany of the CAS, v. v. i.

________________________________________________
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VinaProblem.docx (314K) Download Attachment
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Re: ADL: Vina Error

Diogo Martins
Hello Marcela,

It probably means your receptor is not there. If you type "dir", which
displays files in your current directory, does "5DJ5.pdbqt" show up?

Best regards,

On 9 August 2017 at 05:32, Dvořáková Marcela UEB <[hidden email]>
wrote:

> Hi,
>
>
> I am having problem running Vina: it shows this message: "Error: could not
> open "5DJ5.pdbqt" for reading" (which is my receptor file). See attachment.
> I am using Pymol/autodock tools to create pdbqt file.
>
>
> I used the same procedure before and had no problems.
>
>
> Do you have an idea what can be wrong?
>
>
> Thank you for your answer.
>
>
> Best regards,
>
> Marcela
>
>
> Upozornění: Není-li v této zprávě výslovně uvedeno jinak, není tato
> e-mailová zpráva návrhem na uzavření smlouvy ani přijetím případného návrhu
> na uzavření smlouvy a nezakládá předsmluvní odpovědnost Ústavu
> experimentální botaniky AV ČR, v. v. i.
>
> Disclaimer: If not expressly stated otherwise, this e-mail message cannot
> be considered as a proposal to conclude a contract, neither the acceptance
> of a proposal to conclude a contract, nor does it create any
> pre-contractual liability on the part of the Institute of experimental
> botany of the CAS, v. v. i.
>
> ________________________________________________
> --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---
>
________________________________________________
--- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---
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Re: ADL: Vina Error

Dvořáková Marcela UEB
Hi,


many thank you for your reply. It was the problem with the directory.


Best regards, Marcela

________________________________
Od: [hidden email] <[hidden email]> za uživatele Diogo Martins <[hidden email]>
Odesláno: středa 9. srpna 2017 20:34
Komu: [hidden email]
Předmět: Re: ADL: Vina Error

Hello Marcela,

It probably means your receptor is not there. If you type "dir", which
displays files in your current directory, does "5DJ5.pdbqt" show up?

Best regards,

On 9 August 2017 at 05:32, Dvořáková Marcela UEB <[hidden email]>
wrote:

> Hi,
>
>
> I am having problem running Vina: it shows this message: "Error: could not
> open "5DJ5.pdbqt" for reading" (which is my receptor file). See attachment.
> I am using Pymol/autodock tools to create pdbqt file.
>
>
> I used the same procedure before and had no problems.
>
>
> Do you have an idea what can be wrong?
>
>
> Thank you for your answer.
>
>
> Best regards,
>
> Marcela
>
>
> Upozornění: Není-li v této zprávě výslovně uvedeno jinak, není tato
> e-mailová zpráva návrhem na uzavření smlouvy ani přijetím případného návrhu
> na uzavření smlouvy a nezakládá předsmluvní odpovědnost Ústavu
> experimentální botaniky AV ČR, v. v. i.
>
> Disclaimer: If not expressly stated otherwise, this e-mail message cannot
> be considered as a proposal to conclude a contract, neither the acceptance
> of a proposal to conclude a contract, nor does it create any
> pre-contractual liability on the part of the Institute of experimental
> botany of the CAS, v. v. i.
>
> ________________________________________________
> --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---
AutoDock Mailing List — AutoDock<http://autodock.scripps.edu/mailing_list>
autodock.scripps.edu
AutoDock web site


>
________________________________________________
--- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---
AutoDock Mailing List — AutoDock<http://autodock.scripps.edu/mailing_list>
autodock.scripps.edu
AutoDock web site


Upozornění: Není-li v této zprávě výslovně uvedeno jinak, není tato e-mailová zpráva návrhem na uzavření smlouvy ani přijetím případného návrhu na uzavření smlouvy a nezakládá předsmluvní odpovědnost Ústavu experimentální botaniky AV ČR, v. v. i.

Disclaimer: If not expressly stated otherwise, this e-mail message cannot be considered as a proposal to conclude a contract, neither the acceptance of a proposal to conclude a contract, nor does it create any pre-contractual liability on the part of the Institute of experimental botany of the CAS, v. v. i.
________________________________________________
--- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---