AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (3261)
Replies Last Post Views
ADL: Covalent docking by Dr. Prodip Kumar Roy
2
by Prénom Meriemi Zerro...
ADL: Problem Regarding running of Auto-dock in Macbook Pro by Deepak Yadav
2
by Prénom Meriemi Zerro...
ADL: Generating mol2 ligand files by josh
0
by josh
ADL: Single ligand with multiple protein docking by D Jyo
0
by D Jyo
ADL: ..pdbqt.gz.uri to .pdbqt by horse16031603
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by horse16031603
ADL: q&a from mol2 to pdbqt by horse16031603
1
by Ricardo Hernandez Ar...
ADL: Parameters for Palladium II by Soumya Lipsa Rath
2
by Leandro Bortot
ADL: Not able to open ADT-1.5.7rc1 by Raju Kella
1
by Michel Sanner
ADL: Protein-ligand complex MDS in Gromacs by D Jyo
1
by Drasko Tomic
ADL: Panel docking by asma
2
by Suprim Tha
ADL: Media used in auto dock vina by Mustafa Salim
1
by Diogo Martins
ADL: How to analyze peptides using sequence only (without pdb) in ADCP by Robert H Newman
0
by Robert H Newman
ADL: AutoDock Vina scoring function by Bruno De Almeida Pis...
2
by Bruno De Almeida Pis...
ADL: Docking amphiphiles in Vina by josh
2
by Diogo Martins
ADL: Merging ATOM and HETATM records by Federico Rojas
0
by Federico Rojas
ADL: Regarding error in Autodock FR by D Jyo
2
by D Jyo
ADL: Covalent docking by Dr. Prodip Kumar Roy
0
by Dr. Prodip Kumar Roy
ADL: Peptide docking using sequence in ADCP by Robert H Newman
0
by Robert H Newman
ADL: Charge Application to N- and C-terminus of the Protein by Joey Farrell
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by Joey Farrell
ADL: How to use the linux version of autodock to add non-polar hydrogen to the generated decoys by zc w
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by zc w
ADL: Maximum Grid Volume by Joey Farrell
1
by Diogo Martins
ADL: Non-integral Gasteiger/Kollman Charges by Joey Farrell
1
by Mezei, Mihaly
ADL: Weight of aromatic-aromatic stacking interactions (intra-ligand) by Gianluca Molla
1
by Diogo Martins
Re: ADL: autodock Digest, Vol 185, Issue 1 by Julio Dominguez
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by Julio Dominguez
ADL: docking one ligand to many receptors by Abhigna Nagaraj
4
by Gustavo Seabra
ADL: Types of input for Crankpep by Federico Rojas
2
by HOUSTON Douglas
Re: ADL: autodock Digest, Vol 184, Issue 16 by Julio Dominguez
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by Julio Dominguez
ADL: Command syntax by Federico Rojas
0
by Federico Rojas
ADL: Crank Pep results by Federico Rojas
0
by Federico Rojas
ADL: Problem running autodock vina 1.1.2 from command line by Philip Jordache
2
by Diogo Martins
ADL: ADCP issues by MD
0
by MD
ADL: Still having issues with agfrgui by Federico Rojas
0
by Federico Rojas
ADL: Exhaustiveness parameter by Federico Rojas
4
by Federico Rojas
ADL: New user by jess G
1
by Van Dam, Hubertus
ADL: Vina notification of error by Shira Shila Yair Sab...
0
by Shira Shila Yair Sab...
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