AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (2911)
Replies Last Post Views
ADL: autodock4 in PS3? by Marcos Battistel
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by Marcos Battistel
ADL: Number of active torsions by Mª Victoria Ruiz Pér...
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by Mark Swingle
ADL: pdbqt to pdb by Gav-2
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by Steven Darnell
ADL: MASSIVE ENERGY by Gav-2
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by Gav-2
ADL: Autodock installation problem by awantika shrivastava
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by awantika shrivastava
ADL: How to set up PYTHONPATH on Windows? by Abhishek Tiwari-2
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by Abhishek Tiwari-2
Re: ADL: autodock Digest, Vol 54, Issue 18 by jose correa
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by jose correa
ADL: autodock4 + cygwin = segmentation fault no matter what I do! by Martin Christen
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by Martin Christen
ADL: dovis_non_integral charge warning by thilagavathi ramasam...
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by Mezei, Mihaly
ADL: binaries can't be executed by jose correa
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by Jerome Baffreau
Re: ADL: autodock Digest, Vol 54, Issue 16 by jose correa
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by jose correa
Question about docking parameters by Sang Mok Jang
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by Sang Mok Jang
Re: ADL: autodock Digest, Vol 54, Issue 7 by bijit bhowmik
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by Rudy J. Richardson
analyze the autodock results by Chinsu
5
by Yang Ye-3
ADL: ADT installation problem by V I J A Y A R A J
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by cranky
Re: ADL: autodock Digest, Vol 54, Issue 5 by thaniks
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by Mark Swingle
ADL: total ligand charge error by Gav-2
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by Mark Swingle
ADL: running adt on Windows XP by bijit bhowmik
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by Jerome Baffreau
ADL: How will we do Protein Docking? by ishwar chandra
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by ishwar chandra
energy of docking results by Chinsu
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by Jean DESSOLIN
ADL: get_dockings by Bolser, Diana Kather...
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by Chinsu
ADL: Process not running by annalisa bordogna
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by annalisa bordogna
ADL: all atoms and hetam by joe black-2
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by joe black-2
Re: ADL: autodock Digest, Vol 54, Issue 5 by jose correa
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by jose correa
ADL: Could single Mn2+ ion be used as ligand in Autodock? by qidiaoxiaoyao71
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by qidiaoxiaoyao71
ADL: write_conformations_from_dlg.py by Jean DESSOLIN
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by Jean DESSOLIN
ADL: Python Memory Error by Nathan Stanley
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by Nathan Stanley
Re: ADL: autodock Digest, Vol 54, Issue 4 by thaniks
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by Jerome Baffreau
ADL: how to start? by radhika ramachandran
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by vijaya subramanian
ADL: Autodock and amber FF by Khaled Barakat
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by Khaled Barakat
ADL: Autodock and amber FF by Khaled Barakat
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by Khaled Barakat
ADL: unsuccesful completition by joe black-2
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by ishwar chandra
Docking problem-eval.cc: error energy is not a number by kingkan
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by ishwar chandra
ADL: how to start from command line by ishwar chandra
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by ishwar chandra
ADL: setting gridcenter from command line using prepare_gpf4.py by Aviyah Peri
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by Gav-2
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