AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (2911)
Replies Last Post Views
ADL: Fwd: autodock Digest, Vol 51, Issue 23 by jose correa
2
by Lijo
ADL: the number of flexible residues by 王正
0
by 王正
ADL: charge assignment by Dong, L.
1
by L. Michel Espinoza-F...
ADL: Unrecognized keyword in docking parameter file by ashwani sharma
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by ashwani sharma
ADL: Question by Andrew Ward-5
2
by Andrew Ward-5
ADL: problem with ubuntu 8.10 by antonio muzzle
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by antonio muzzle
Re: ADL: autodock Digest, Vol 52, Issue 8 by thaniks
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by thaniks
ADL: Covalent map and Autogrid 4.0.0 by Andreas Peter Schull...
4
by Oleg Trott
ADL: Unable to assign MAP type to atom Mg!!?? by 刘明-3
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by ambivalentno
ADL: Hi by thaniks
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by thaniks
ADL: Showing more than the 1 configuration of the best binding energy in the output file by surasak chunsrivirot
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by surasak chunsrivirot
ADL: Docking energy values by Mª Victoria Ruiz Pér...
1
by naga vignesh
ADL: File conversion... by kannan cham
2
by mohana lakshmi
ADL: move/ligand by Gav-2
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by Gav-2
Re: ADL: newbie protein protein interaction (Michael Osborne) by David M. Carter
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by David M. Carter
ADL: newbie protein protein interaction by Michael Osborne
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by Michael Osborne
ADL: help macromolecule file.... by kannan cham
3
by ikerman
ADL: flex res error by Gav-2
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by Gav-2
ADL: sodium, grid box, write complex by Simon Ági
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by sargis
ADL: (no subject) by Marco MELZER
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by Marco MELZER
ADL: using scripts for receptor flexible residues by Gav-2
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by Gav-2
ADL: Grid maps atom type by Dong, L.
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by Dong, L.
ADL: Grid maps atom type by Dong, L.
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by Dong, L.
ADL: TclError: Togl: couldn't get visual by U.Dijkman
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by Carlos Família
ADL: can autodock run in a quad core processor? by Miguel Quiliano Meza
4
by Gav-2
ADL: please advise by Gerardo Byk
1
by sargis
ADL: AD4 support Cluster run? by Lijo
3
by Stéphane Téletchéa-3
ADL: ADT frustration by Simon Kolstoe
2
by ikerman
ADL: Bug in writePDBQT.cc and PDBQT output from docking by David Lancia, Jr
3
by sargis
Re: ADL: autodock Digest, Vol 51, Issue 18 by jose correa
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by jose correa
ADL: problem with # of rotatable bonds for ligands by Ali CAGIR
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by Ali CAGIR
ADL: binding energy is too big!? by SongLing,Ma
0
by SongLing,Ma
ADL: Is there a problem in the prepare_gpf4.py script? by Xiang Fu
0
by Xiang Fu
ADL: summarize_results4.py gives ValueError by Sebastian Kruggel
1
by Gavin Seddon
ADL: licensing by RadhaCharan Dash
1
by arthur olson
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