AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (2859)
Replies Last Post Views
ADL: Unable to assign MAP type to atom Mg!!?? by 刘明-3
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by 刘明-3
ADL: prepare_ligand4 problem by Simon Kolstoe
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by sargis
ADL: Virtual Screening by rahmanm
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by ikerman
Re: ADL: autodock Digest, Vol 51, Issue 3 by jose correa
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by jose correa
ADL: Docking a carbon nanotube to a protein by Robert Johnson
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by Robert Johnson
ADL: Little include missing in autodock 4.0.0 by Stéphane Téletchéa-3
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by Stéphane Téletchéa-3
ADL: Please, give me some advise about analyzing results of docking by Mª Victoria Ruiz Pér...
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by Kukol, Andreas
ADL: Charge error by Juan Vorster
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by Juan Vorster
ADL: ZINC ligand preparation by Paul Coffman
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by Paul Coffman
ADL: Visulization problems by Hemant Poudyal
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by Hemant Poudyal
ADL: Docking Energy difference between Autodock3 and Autodock4 by divya dube
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by Kukol, Andreas
ADL: Manual? and a few questions re: docking potential compounds by rahmanm
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by rahmanm
ADL: Vina 1.0 beta 2 released; license changes by Oleg Trott
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by Oleg Trott
ADL: Tutorial by Abdul Kader Khan
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by Abdul Kader Khan
ADL: Non-integral total charge on ligand! by Wenyong Tong
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by Wenyong Tong
ADL: Hardtorcon and Gausstorcon by Matthew Tessier
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by Matthew Tessier
ADL: Yet another question about gasteiger charges for aromatic charged ligands by Florian Nachon
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by Florian Nachon
ADL: no bound conformation by Wenyong Tong
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by Kukol, Andreas
ADL: Blind Docking by chandra sekhar-3
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by chandra sekhar-3
Re: ADL: submit.py or submit4.py by Wilfred Li
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by Wilfred Li
ADL: AutoDock with RNA by Alexander Berchansky
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by Alexander Berchansky
ADL: what can be the range of binding energy value to define that one ligand has more binding affinity than the other? by Mahesh
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by Mahesh
ADL: Error in Edit -> bonds -> remove bonds by Mahesh
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by Mahesh
ADL: Error: no residue found using string while making flexible residue by Mahesh
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by Mahesh
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