AutoDock

This forum is an archive for the mailing list autodock@scripps.edu (more options) Messages posted here will be sent to this mailing list.
This list is intended for novice and expert users of the ligand-protein and protein-protein docking software AutoDock, AutoGrid and AutoDockTools (ADT). This list will provide a forum for users to share experience, to ask questions about things not covered in the documentation, and hopefully, to get answers to these questions. Questions may range from technical to scientific, but should be about docking molecules using AutoDock and its associated programs and utilities. Suggestions for new features are also welcome. Announcements of new software versions and functionalities will be made on this list. In general, bugs should not be reported here but entered into our MGLBugzilla database. Just go to http://mgldev.scripps.edu/bugs/ and click on the "Open a new MGLBugzilla account" link.
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Topics (2859)
Replies Last Post Views
ADL: ligand structure is getting broken by abhisek Mondal
1
by Diogo Martins
ADL: Double bonds in pdbqt file? by Lubberink, M.
6
by dr. sakura
ADL: "As" atom type in Autodock Vina by Chitrak Gupta
4
by Chitrak Gupta
ADL: PostDoctoral position available by Michel Sanner
0
by Michel Sanner
ADL: why the gasteiger charges are different generated by the ADT GUI METHOD and prepare_ligand4.py by 陈照强
1
by Diogo Martins
ADL: Fw: why the gasteiger charges are different generated by the ADT GUI METHOD and prepare_ligand4.py by 陈照强
0
by 陈照强
ADL: Error 13 in Chimera by Amy De Lury
1
by bushra TAJ
ADL: Service 'opal:vina_1.1.2' is unavailable. See Reply Log for more details. by Amy De Lury
0
by Amy De Lury
ADL: Hadoop implementation of Autodock4.2 by Mayank Bakshi
1
by Diogo Martins
ADL: Scoring a known protein-ligand complex by Sundar
1
by Diogo Martins
ADL: Running Autodock With Hadoop by Shantanu S2
0
by Shantanu S2
ADL: AutoDockFR for Vina? by Rudy J. Richardson
3
by bushra TAJ
ADL: Discrepancy in Binding energy by Ritika Chauhan
0
by Ritika Chauhan
ADL: Missing substituents in the converted pdb format by dr. sakura
0
by dr. sakura
ADL: (no subject) by sughra muzaffar
9
by liu junjun
ADL: Problem in installation of Autodock-Vina by Uzma A. Faridi
2
by dalpizar
ADL: covalent ligand with rigid receptor by gizem tatar
1
by Michel Sanner
ADL: MGLTools2 / AutoDockFR pre-release by Michel Sanner
7
by bushra TAJ
ADL: viewing results by Dvořáková Marcela UE...
27
by Filipe Dalmatti Lima
ADL: I have some error that don't know how to solve about autodock by Zy。
1
by bushra TAJ
ADL: Parameters for docking with metal ions in receptor by DimitryASuplatov
1
by dr. sakura
ADL: Different metal ions by Joshua Woods
0
by Joshua Woods
ADL: cation-pi interaction on vina by rama david
1
by HOUSTON Douglas
ADL: Autodock vina cation-pi interaction by rama david
1
by Diogo Martins
ADL: (no subject) by Gabriel Poulson
0
by Gabriel Poulson
ADL: Problems with vina - invalid atom type by Fok Mello
1
by Diogo Martins
ADL: Python configuration for TK by Mohammad Salem
0
by Mohammad Salem
ADL: Issue with atomic type assignment by yjianpen
0
by yjianpen
ADL: Cannot assign atomic type by yjianpen
0
by yjianpen
ADL: Spacing parameter of the grid box - Autodock Vina by Maicon Delarmelina
1
by Diogo Martins
ADL: Installation issue by Ibrahim Ali
2
by Ibrahim Ali
ADL: Flexible backbone docking by Stephen Boulton
0
by Stephen Boulton
ADL: (no subject) by 雷帝佑
0
by 雷帝佑
ADL: (no subject) by kalsoom
0
by kalsoom
ADL: comparision of different ligands. by neelam wafa
4
by Mr. Pramodkumar P Gu...
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