Re: ADL: autodock Digest, Vol 127, Issue 17

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Re: ADL: autodock Digest, Vol 127, Issue 17

tusharranjanmoharana
Hi Brandon,
The problem you are encountering is a bug. Pymol plugin for vina doesn't work on windows. Try it on linux.

Best Regard

Tushar Ranjan Moharana
B. Tech NIT Warangal
Ph. D student, CCMB, Hyderabad, India    

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Subject: autodock Digest, Vol 127, Issue 17

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Today's Topics:

   1.  ImportError: No module named
      AutoDockTools.MoleculePreparation ? (Brandon Soh)


----------------------------------------------------------------------

Message: 1
Date: Mon, 23 Mar 2015 14:25:03 +1000
From: Brandon Soh <[hidden email]>
Subject: ADL: ImportError: No module named
        AutoDockTools.MoleculePreparation ?
To: [hidden email]
Message-ID:
        <[hidden email]>
Content-Type: text/plain; charset=UTF-8

Hello,

I've recently installed pymol 1.3 education version, autodock vina,
autodock 4.2.6, mgl tools 1.5.6 and python 2.5.4. I managed to install
autodock vina as a plugin onto pymol and set the configuration paths as
directed. However, when I proceed to generate a receptor it states that an
error has occurred and states the following:
Batch: call "C:\Program Files
(x86)\MGLTools-1.5.6\Lib\site-packages\AutoDockTools\Utilities24\prepare_receptor4.py"
-r "C:\Users\Bsohkk\pymol\receptor.4djh__kappa_.pdb" -o
"C:\Users\Bsohkk\pymol\receptor.4djh__kappa_.pdbqt" -A checkhydrogens
Traceback (most recent call last):
  File "C:\Program Files
(x86)\MGLTools-1.5.6\Lib\site-packages\AutoDockTools\Utilities24\prepare_receptor4.py",
line 12, in <module>
    from AutoDockTools.MoleculePreparation import AD4ReceptorPreparation
ImportError: No module named AutoDockTools.MoleculePreparation
?
Please help me resolve this issue. Thank you.

Regards,
Brandon Soh?????


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End of autodock Digest, Vol 127, Issue 17
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Re: ADL: autodock Digest, Vol 127, Issue 17

ravi bhakuni
Dear Sir

Can anyone tell me why I am getting very high value of RMSD after docking .

Regards
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